Gene-Based markers

[0-99] [100-199] [200-299] [300-399] [400-499] [500-599] [600-699] [700-799] [800-831]

Display (0 - 99) out of 831 markers

MgSTS 1Mimulus unigene:MgU537Phytome id:
 Arabidopsis homolog:At5g54770
Genetic markerPhysical marker
Map:Pools:5,10,15
Linkage group:Set:D2
Guttatus map status:amplified in IM62 (the source genotype for the EST sequence)Phys map status:hybridized, one or more BAC matches found in guttatus only
Forward primer:AATGGAAGTTGCCGAAATTGOvergo seq fw:ACGACTTCAAATTCCAGCCCATCA
Reverse primer:AATGCCAAGTGAGCTGCTTTOvergo seq rv: GCGACGATGGATTCCTTGATGGGC
Tm:Tm:65.40
IM62 length729(M13)BAC contig(s):
    
MgSTS 2Mimulus unigene:MgU803Phytome id:mgut3498
 Arabidopsis homolog:At3g12050
Genetic markerPhysical marker
Map:Pools:1,6,12
Linkage group:Set:D
Guttatus map status:amplified in IM62 (the source genotype for the EST sequence)Phys map status:hybridized, one or more BAC matches found in guttatus only
Forward primer:GCGGCGAGTTCAGTATTTTCOvergo seq fw:AATTGGGCTCCTCGAAAGTTAGCC
Reverse primer:AATTGGGCTCCTCGAAAGTTOvergo seq rv: ATTGTGTCCACGGTTCGGCTAACT
Tm:Tm:65.40
IM62 length842BAC contig(s):
    
MgSTS 3Mimulus unigene:MgU876Phytome id:mgut4029
 Arabidopsis homolog:At3g54250
Genetic markerPhysical marker
Map:Pools:1,6,13
Linkage group:Set:A
Guttatus map status:amplified in IM62 (the source genotype for the EST sequence)Phys map status:hybridized, one or more BAC matches found in guttatus only
Forward primer:CTTCACTCATGACCGCATGTOvergo seq fw:ATTCTCCCGATCAACGACAGCATT
Reverse primer:CCGGAGTTCCCTCAAACAATOvergo seq rv: GGTCGAGAGTAACGCTAATGCTGT
Tm:Tm:65.40
IM62 length708BAC contig(s):
    
MgSTS 4Mimulus unigene:MgU881Phytome id:mgut4062
 Arabidopsis homolog:At4g14910
Genetic markerPhysical marker
Map:Pools:1,6,13
Linkage group:Set:D
Guttatus map status:amplified in IM62 (the source genotype for the EST sequence)Phys map status:hybridized, one or more BAC matches found in guttatus only
Forward primer:CGGTTTGGAGACTTCTCAGCOvergo seq fw:CTTGACGAAAAGCCCTTGCAAAGG
Reverse primer:ACTCAAATGTGGCCTTCCAGOvergo seq rv: GAAGCAACCTTCAAGGCCTTTGCA
Tm:Tm:65.40
IM62 length768BAC contig(s):174, 1709
    
MgSTS 5Mimulus unigene:MgU958Phytome id:mgut4601
 Arabidopsis homolog:At3g54190
Genetic markerPhysical marker
Map:Pools:1,6,14
Linkage group:Set:D
Guttatus map status:amplified in IM62 (the source genotype for the EST sequence)Phys map status:hybridized, one or more BAC matches found in guttatus only
Forward primer:AAATCCGACACCGATGAGTCOvergo seq fw:GTTGCTCGCCTTGATTTTCGCTAG
Reverse primer:GGCATTTTCCGGTCAAGATAOvergo seq rv: CTTGACCGGAAAATGCCTAGCGAA
Tm:Tm:65.40
IM62 length859BAC contig(s):
    
MgSTS 6Mimulus unigene:MgU1072Phytome id:mgut472
 Arabidopsis homolog:At2g13360
Genetic markerPhysical marker
Map:Pools:1,6,15
Linkage group:Set:D
Guttatus map status:amplified in IM62 (the source genotype for the EST sequence)Phys map status:hybridized, one or more BAC matches found in guttatus only
Forward primer:AACAACTTGGCCACCGTAAGOvergo seq fw:GACTGCTACTGGAGTTACCAACAA
Reverse primer:CCACATCTATTCCCCACTCGOvergo seq rv: TCTTACGGTGGCCAAGTTGTTGGT
Tm:Tm:65.40
IM62 length691BAC contig(s):289, 2775, 657
    
MgSTS 7Mimulus unigene:MgU151Phytome id:
 Arabidopsis homolog:At5g12040
Genetic markerPhysical marker
Map:Pools:1,7,11
Linkage group:Set:D
Guttatus map status:amplified in IM62 (the source genotype for the EST sequence)Phys map status:hybridized, one or more BAC matches found in guttatus only
Forward primer:AATCGCCTACTCCTCCCATCOvergo seq fw:CCAGCTGGTAAAGATCGCCTCGTC
Reverse primer:TCCTTAGCTTGTCGGCAGTTOvergo seq rv: CCATTAGAGAAGCAAAGACGAGGC
Tm:Tm:65.40
IM62 length639BAC contig(s):
    
MgSTS 8Mimulus unigene:MgU183Phytome id:mgut778
 Arabidopsis homolog:At3g07670
Genetic markerPhysical marker
Map:Pools:1,7,12
Linkage group:Set:D
Guttatus map status:amplified in IM62 (the source genotype for the EST sequence)Phys map status:hybridized, one or more BAC matches found in guttatus only
Forward primer:GCTCTTCGTTCCTCCCTCTCOvergo seq fw:GTGGAGGTAGGAGAGAGAGGACTC
Reverse primer:ACTTCACCAGCCTCACGATTOvergo seq rv: TATTCTTCAAAGCGACGAGTCCTC
Tm:Tm:65.40
IM62 length745BAC contig(s):2651, 2724, 1066
    
MgSTS 9Mimulus unigene:MgU242Phytome id:
 Arabidopsis homolog:At5g08540
Genetic markerPhysical marker
Map:Pools:1,7,13
Linkage group:Set:D
Guttatus map status:amplified in IM62 (the source genotype for the EST sequence)Phys map status:hybridized, one or more BAC matches found in guttatus only
Forward primer:TTAAGACCGTCCGCAAATTCOvergo seq fw:CGGCTTCTGAAACAGCGTGTAGAC
Reverse primer:TCCCTTCTCGAACAGCTCATOvergo seq rv: GATGCTGAGAAGCTTTGTCTACAC
Tm:Tm:65.40
IM62 length741.6BAC contig(s):246, 2768
    
MgSTS 10Mimulus unigene:MgU261Phytome id:
 Arabidopsis homolog:At2g33800
Genetic markerPhysical marker
Map:Pools:1,7,14
Linkage group:Set:D
Guttatus map status:amplified in IM62 (the source genotype for the EST sequence)Phys map status:hybridized, one or more BAC matches found in guttatus only
Forward primer:TGCCCATGACGAAATACAAGOvergo seq fw:TTAGAGCGTTGTTACTGCCTAGCT
Reverse primer:CTGCCCCATAGTCTGCTTCAOvergo seq rv: AACGCCCTCGGAAAACAGCTAGGC
Tm:Tm:65.40
IM62 length852.5BAC contig(s):82, 110
    
MgSTS 11Mimulus unigene:MgU340Phytome id:mgut1342
 Arabidopsis homolog:At1g06570
Genetic markerPhysical marker
Map:F2N1Pools:1,6,14
Linkage group:13Set:A
Position:116.5 cMShow in MapViewer  
Guttatus map status:map position determinedPhys map status:hybridized, one or more BAC matches found in guttatus only
Forward primer:GCTCCAGATTTTCACCAAGCOvergo seq fw:GGAACTTTGCTCCAGATTTTCACC
Reverse primer:ACATCCACCCTTCTGGTACGOvergo seq rv: TATCACCGACGGGCTTGGTGAAAA
Tm:Tm:65.40
IM62 length774BAC contig(s):
    
MgSTS 12Mimulus unigene:MgU382Phytome id:mgut1532
 Arabidopsis homolog:At1g51510
Genetic markerPhysical marker
Map:Pools:1,7,15
Linkage group:Set:D
Guttatus map status:amplified in IM62 (the source genotype for the EST sequence)Phys map status:
Forward primer:CGCTTTGACACCCTTGATTCOvergo seq fw:CCTCCTTCTGAAAGGACCTTTGCT
Reverse primer:GCCTCCTCATGAACTCCAGTAOvergo seq rv: CGTTGATTGGGCATTCAGCAAAGG
Tm:Tm:65.40
IM62 length848BAC contig(s):
    
MgSTS 13Mimulus unigene:MgU460Phytome id:
 Arabidopsis homolog:At1g04850
Genetic markerPhysical marker
Map:Pools:1,8,11
Linkage group:Set:D
Guttatus map status:amplified in IM62 (the source genotype for the EST sequence)Phys map status:hybridized, one or more BAC matches found in guttatus only
Forward primer:AAATCCAGGCGAGGAGAAATOvergo seq fw:AAGCGCAGGAGCACGCGGAGTTAA
Reverse primer:AATCCGCAAAGTTCGAGAAAOvergo seq rv: AAATTGGTGTGTTTGGTTAACTCC
Tm:Tm:65.40
IM62 length618BAC contig(s):99, 369
    
MgSTS 14Mimulus unigene:MgU464Phytome id:mgut1852
 Arabidopsis homolog:At3g63410
Genetic markerPhysical marker
Map:Pools:1,8,12
Linkage group:Set:D
Guttatus map status:amplified in IM62 (the source genotype for the EST sequence)Phys map status:hybridized, one or more BAC matches found in guttatus only
Forward primer:AAGGAGCCATTGAAGGACTGOvergo seq fw:TACAAACGGGTTCACAGGTTCCGA
Reverse primer:AAGCCTCAGCACCCTGTAAGOvergo seq rv: AAAGGCGGAGGATGTATCGGAACC
Tm:Tm:65.40
IM62 length646BAC contig(s):349, 1231, 762
    
MgSTS 15Mimulus unigene:MgU485Phytome id:
 Arabidopsis homolog:At2g24060
Genetic markerPhysical marker
Map:Pools:1,8,13
Linkage group:Set:D
Guttatus map status:amplified in IM62 (the source genotype for the EST sequence)Phys map status:hybridized, one or more BAC matches found in guttatus only
Forward primer:CCGTGTGGATTTGAAGGAGTOvergo seq fw:GGTCCAAGCCACCTGTTGATGAAG
Reverse primer:CGCCGTCTTTCAAGAATCTCOvergo seq rv: GAAGAGATATCTAGGGCTTCATCA
Tm:Tm:65.40
IM62 length556?603?BAC contig(s):468, 823, 455, 2204
    
MgSTS 16Mimulus unigene:MgU609Phytome id:mgut2416
 Arabidopsis homolog:At3g23940
Genetic markerPhysical marker
Map:F2N1Pools:1,6,15 / 1,6,11
Linkage group:14Set:A / 3x3x3
Position:116.4 cMShow in MapViewer  
Guttatus map status:map position determinedPhys map status:
Forward primer:CTGCAATCGAGGGATTTGATOvergo seq fw:ATGTGCTACAGTCTGCAATCGAGG
Reverse primer:GCTCGGTCGATTCAGTCTTCOvergo seq rv: TGTCGGCGATCAAATCCCTCGATT
Tm:Tm:65.40
IM62 length394BAC contig(s):
    
MgSTS 17Mimulus unigene:MgU1140Phytome id:mgut525
 Arabidopsis homolog:At5g12290
Genetic markerPhysical marker
Map:F2N1Pools:1,7,11
Linkage group:14Set:A
Position: 46.4 cMShow in MapViewer  
Guttatus map status:map position determinedPhys map status:hybridized, one or more BAC matches found in guttatus only
Forward primer:GAGGCATGCAAAAGACACTGOvergo seq fw:GCTCCATGCGTGATGCAATACTCA
Reverse primer:GTTTGAAGACCTGGCTTTGCOvergo seq rv: CAAACGGATCACAAGCTGAGTATT
Tm:Tm:65.40
IM62 length217BAC contig(s):2591, 694
    
MgSTS 18Mimulus unigene:MgU772Phytome id:mgut3331
 Arabidopsis homolog:At5g18580
Genetic markerPhysical marker
Map:F2N1Pools:1,7,12
Linkage group:14Set:A
Position: 68.6 cMShow in MapViewer  
Guttatus map status:map position determinedPhys map status:hybridized, one or more BAC matches found in guttatus only
Forward primer:GGTTGGCCAAGTATCGATTTOvergo seq fw:AAAAGAGCGCCGAAGCTGGCTCCA
Reverse primer:AGGCAAACCCACATAGCATCOvergo seq rv: TTGTAGAAGCTTGGAATGGAGCCA
Tm:Tm:65.40
IM62 length265BAC contig(s):470, 836
    
MgSTS 19Mimulus unigene:MgU140Phytome id:mgut658
 Arabidopsis homolog:At1g60430
Genetic markerPhysical marker
Map:F2N1Pools:1,7,13
Linkage group:11Set:A
Position: 49.6 cMShow in MapViewer  
Guttatus map status:map position determinedPhys map status:hybridized, one or more BAC matches found in guttatus only
Forward primer:ATTTGCCGTTCCACAATCTCOvergo seq fw:CGCCACACTCAATAACCTCCCACT
Reverse primer:AGTTCCATTCGACCGATACGOvergo seq rv: GATACGTGAAGAAACGAGTGGGAG
Tm:Tm:65.40
IM62 length334BAC contig(s):
    
MgSTS 20Mimulus unigene:MgU529Phytome id:
 Arabidopsis homolog:At3g56940
Genetic markerPhysical marker
Map:F2N1Pools:1,7,14 / 1,6,12
Linkage group:11Set:A / 3x3x3
Position: 65.4 cMShow in MapViewer  
Guttatus map status:map position determinedPhys map status:hybridized, one or more BAC matches found in guttatus only
Forward primer:ACTGGTGCCAAGACGAGAATOvergo seq fw:GGATGCTCAACATCTGGTACCGCT
Reverse primer:ATCCCCTCGTAAAAGGCTGTOvergo seq rv: CTGCAAGAATATTCCCAGCGGTAC
Tm:Tm:65.40
IM62 length275BAC contig(s):1262, 684
    
MgSTS 21Mimulus unigene:MgU551Phytome id:
 Arabidopsis homolog:At2g39730
Genetic markerPhysical marker
Map:F2N1Pools:1,7,15
Linkage group:6Set:A
Position: 44.2 cMShow in MapViewer  
Guttatus map status:map position determinedPhys map status:hybridized, one or more BAC matches found in guttatus only
Forward primer:ACTTGTTTTCGCCAAGATGGOvergo seq fw:CCGTTCTCAACTCCTACGACTATA
Reverse primer:GTTGATGAAGAGGCAGCACAOvergo seq rv: TTAAGGCCCTGGCTGATATAGTCG
Tm:Tm:65.40
IM62 length229BAC contig(s):
    
MgSTS 22Mimulus unigene:MgU1122Phytome id:mgut510
 Arabidopsis homolog:At2g40090
Genetic markerPhysical marker
Map:F2N1Pools:1,8,11
Linkage group:6Set:A
Position: 71.4 cMShow in MapViewer  
Guttatus map status:map position determinedPhys map status:hybridized, one or more BAC matches found in guttatus only
Forward primer:TGGGTGTTCAACCAAGTGATOvergo seq fw:GACTTCATGATCGAGGCCAAGAAC
Reverse primer:CCCATGCTTAAACATCATTTCAOvergo seq rv: CCAAGCACTTTACGCTGTTCTTGG
Tm:Tm:65.40
IM62 length286BAC contig(s):
    
MgSTS 23Mimulus unigene:MgU475Phytome id:mgut1903
 Arabidopsis homolog:At3g04240
Genetic markerPhysical marker
Map:Pools:1,6,11 / 4,10,14
Linkage group:Set:B / C
Guttatus map status:genotyped by size (map position yet to be determined)Phys map status:hybridized, one or more BAC matches found in guttatus only
Forward primer:TGCGTTTAACTTGCCCTCTTOvergo seq fw:CCTGTTTGTAAGGTCTCGGAGCTT
Reverse primer:CTCCATGTCGTTCTCAGCAAOvergo seq rv: GGCACTGAATCCTTCAAAGCTCCG
Tm:Tm:65.40
IM62 length241BAC contig(s):1168, 12, 183, 227, 1645
    
MgSTS 24Mimulus unigene:MgU125Phytome id:mgut587
 Arabidopsis homolog:At2g44160
Genetic markerPhysical marker
Map:F2N1Pools:1,8,12 / 1,6,13
Linkage group:14Set:A / 3x3x3
Position: 9.0 cMShow in MapViewer  
Guttatus map status:map position determinedPhys map status:hybridized, one or more BAC matches found in guttatus only
Forward primer:GGACAAGTTCGTCCAAGTCGOvergo seq fw:GCACTCGACCTGGTCAAGCATATC
Reverse primer:CCCCTCCCTCCTGAATAACAOvergo seq rv: CACCATATTCAGAACGGATATGCT
Tm:Tm:65.40
IM62 length386BAC contig(s):581, 523
    
MgSTS 25Mimulus unigene:MgU504Phytome id:
 Arabidopsis homolog:At5g52570
Genetic markerPhysical marker
Map:F2N1Pools:1,8,13
Linkage group:6Set:A
Position: 14.6 cMShow in MapViewer  
Guttatus map status:map position determinedPhys map status:hybridized, one or more BAC matches found in guttatus only
Forward primer:AATGGAGATGTGGGCAAGATOvergo seq fw:CTTCCCTATCCAGCTCTTCCAACC
Reverse primer:AATTGCGGGAACAGCATTAGOvergo seq rv: CTTGAAGAAGTAGGAGGGTTGGAA
Tm:Tm:65.40
IM62 length291BAC contig(s):2812, 3262, 66, 2983
    
MgSTS 26Mimulus unigene:MgU229Phytome id:mgut921
 Arabidopsis homolog:At1g20580
Genetic markerPhysical marker
Map:F2N1Pools:1,8,14
Linkage group:11Set:A
Position: 73.4 cMShow in MapViewer  
Guttatus map status:map position determinedPhys map status:hybridized, one or more BAC matches found in guttatus only
Forward primer:GATGGAAAGCTCTCGCAACTOvergo seq fw:CCTAGCTTCTAAACGCTTAAACAT
Reverse primer:CGCTTAAACATGGGAGCATTOvergo seq rv: GCTCAAGAATGCTCCCATGTTTAA
Tm:Tm:63.35
IM62 length180BAC contig(s):1692, 151
    
MgSTS 27Mimulus unigene:MgU374Phytome id:mgut1502
 Arabidopsis homolog:At5g20570
Genetic markerPhysical marker
Map:F2N1Pools:1,8,15
Linkage group:10Set:A
Position: 53.4 cMShow in MapViewer  
Guttatus map status:map position determinedPhys map status:hybridized, one or more BAC matches found in guttatus only
Forward primer:GGGAAGGTGTTCGAGATCAAOvergo seq fw:CCACCTGCTAATACAGTGGAAGTG
Reverse primer:TCCTGCAAATCGCACAATTAOvergo seq rv: TTGCAACCATGCGTTCCACTTCCA
Tm:Tm:65.40
IM62 length195BAC contig(s):
    
MgSTS 28Mimulus unigene:MgU836Phytome id:
 Arabidopsis homolog:At5g58330
Genetic markerPhysical marker
Map:F2N1Pools:1,9,11 / 1,6,14
Linkage group:6Set:A / 3x3x3
Position: 82.6 cMShow in MapViewer  
Guttatus map status:map position determinedPhys map status:hybridized, one or more BAC matches found in guttatus only
Forward primer:CGATTGTTGATGCAATCAGGOvergo seq fw:GGAAGCATTGTATCTCCCGGAAGA
Reverse primer:GCACGGCATACTGAAGACAAOvergo seq rv: GTATCGCTGTGTGTGATCTTCCGG
Tm:Tm:65.40
IM62 length245.6BAC contig(s):
    
MgSTS 29Mimulus unigene:MgU839Phytome id:mgut3758
 Arabidopsis homolog:At4g29040
Genetic markerPhysical marker
Map:F2N1Pools:1,9,12 / 1,6,15
Linkage group:14Set:A / 3x3x3
Position: 52.8 cMShow in MapViewer  
Guttatus map status:map position determinedPhys map status:hybridized, one or more BAC matches found in guttatus only
Forward primer:TGGGATCTTGTCGTTTGTTGOvergo seq fw:GTCGTTTGTTGATAAGGATCAACT
Reverse primer:ACAGATACCATGGGGTCCACOvergo seq rv: CGCACATCCAGGCTCGAGTTGATC
Tm:Tm:65.40
IM62 length430BAC contig(s):498, 693
    
MgSTS 30Mimulus unigene:MgU860Phytome id:mgut3908
 Arabidopsis homolog:At5g63860
Genetic markerPhysical marker
Map:Pools:
Linkage group:Set:
Guttatus map status:amplified in IM62 (the source genotype for the EST sequence)Phys map status:
Forward primer:TGGTGTAGGTGACAGCATCGOvergo seq fw:
Reverse primer:TGAGAACACGTTCTGCCTGTOvergo seq rv:
Tm:Tm:
IM62 length233BAC contig(s):
    
MgSTS 31Mimulus unigene:MgU886Phytome id:mgut4096
 Arabidopsis homolog:At5g46110
Genetic markerPhysical marker
Map:F2N1Pools:1,9,13
Linkage group:8Set:A
Position: 84.8 cMShow in MapViewer  
Guttatus map status:map position determinedPhys map status:hybridized, one or more BAC matches found in guttatus only
Forward primer:TGGGTTGGAATGTTTTACCAOvergo seq fw:CCACTCTCTCGAGTGTGTTCGTTG
Reverse primer:CGAAGGCCAAGATTGAGAAGOvergo seq rv: CTCTACAATCAGCTTGCAACGAAC
Tm:Tm:65.40
IM62 length216BAC contig(s):
    
MgSTS 32Mimulus unigene:MgU949Phytome id:mgut4543
 Arabidopsis homolog:At1g60000
Genetic markerPhysical marker
Map:Pools:1,8,15
Linkage group:Set:D
Guttatus map status:amplified in IM62 (the source genotype for the EST sequence)Phys map status:hybridized, one or more BAC matches found in guttatus only
Forward primer:ACCGGAAAAAGCAGAGGATTOvergo seq fw:CCACAACCGAAGGAGCCACTATAT
Reverse primer:GGCTGTGCCGAGAAAGTAACOvergo seq rv: TGTAGTCCGTTTCCGAATATAGTG
Tm:Tm:65.40
IM62 length244(M13)BAC contig(s):
    
MgSTS 33Mimulus unigene:MgU962Phytome id:mgut4637
 Arabidopsis homolog:At5g53180
Genetic markerPhysical marker
Map:Pools:1,9,11
Linkage group:Set:D
Guttatus map status:amplified in IM62 (the source genotype for the EST sequence)Phys map status:hybridized, one or more BAC matches found in guttatus only
Forward primer:TTGATGGGAAAAAGCTGGACOvergo seq fw:GTCCATCCAAGGCTTGCTTTGAAG
Reverse primer:GAACAGGCCCAAAAGATGAAOvergo seq rv: GCTCAGACTGCTATTGCTTCAAAG
Tm:Tm:65.40
IM62 length218.6(M13)BAC contig(s):3063, 2183, 3005, 2908, 2768, 348, 3069
    
MgSTS 34Mimulus unigene:MgU963Phytome id:mgut4646
 Arabidopsis homolog: