EST 5002

Library
Name: 0048P
Strain: IM62
Tissue: tips of developing inflorescences, consisting of very young
unopened floral buds (< 5mm long), floral meristems,
and shoot apical meristems
Host: DH5alpha
Vector: Plasmid pGEM-T Easy
Description: IM62 is a highly inbred line propagated for > 10 generations by
self-fertilization and derived from a predominantly outcrossing
(~80%), annual population of M. guttatus located on Iron Mountain,
Linn Co., Oregon. Plants were grown from seed in the greenhouses
at Duke University and tissue for RNA extraction was collected
from 1-2 month old plants. RNA was extracted using the standard
protocol for the Qbiogene FastRNA Pro Green kit. cDNA was
synthesized from total RNA using the BD Biosciences SMART PCR
cDNA synthesis kit. No size selection was performed. Library
was not normalized and was not directional. Titer of primary
library was ~1000 cfu/ng vector (pGEM-T Easy). High quality
start and High quality end are determined by phred score >= 20
for the final base, and an average phred score >= 20 for the final
10 bases. Sequence ends were determined using cross_match to
remove vector, and with ends of average phred score <= 11
removed, and homopolymeric end sequences of phred score <= 15
removed. Contaminants (bacterial and fungal) were screened for and
excluded. Project support provided by NSF FIBR.
EST
Plate: 0015
Well: C10
Primer:
Genbank record: CV516467
Genbank sequence name: 0048P0015Z_C10_T7
Trace file: 568476086
Unigene: MgU314 MgU9935
sequence: GAATGTATAC GACTCACTAT AGGGCGAATT GGGTACCGGG CCCCCCCTCG AGTTTTTTTT TTTTTTTTTT ATTAATAGAC AACAAATATA TTTCATTAGT GGAAATATGG TACAAGTACA ACAGCAATCA TGCACACATA TATGTAGACA ACAAACTGTA ATAGAATTGC AGCAAACTAA CAATACCAGC TCTAAAATGA CATCTGTACA AATGTGAGCT TCATCTCTGC AGTAAGAGAG CAGCTCCGAC AAGACCCATC CACAAAGTTA GAGAAACCCA GAATGTTCGA TTCTTCTCCA TCCCGACGGG CGGTTTCCAC ACCAGAAAAT CCCCCAAATA GTCTTTTGAT GATGTCAGCT GATTCGTTGT GGAGCCGCTC ATCCTTTCGT CTTTGTCCTT GTTTTTATCC GTCCAAGTAG CTGCGTAACT ATCATAACTC GAACCTATTA GTGGGATCGT GACCATCTCT TCCTGCGATA TCTTAAGCTT GGGCGCTTGC AGAATGTAGC GCAGCTCCGA GGCTTGCCTT CGAATACTGA CACTGGGATG CTTCCTTTCC AATTGCTTAT AAAGATCAAT GCAGTCCGCA TGGCGATTGC TAGCCTCGTA AGCCATTGCC AGCCATATTT GTATCTCACC GCCNAACAAG GTTGGCCTGG GAATGATTGT GAGTGCACCT TCGAGAAATT CAATGGCGCG TCCATACATA CCCCTTCCGT ATGCTTTCTG CCCAAATCGA CATCAATTGA GCGGTTTTCC TTCGTTCTGC TTGCTCCTTT GCTACCT