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	Choose program to use and database to search: Program Database Enter sequence below in FASTA format Or load it from disk Set subsequence: From To The query sequence is filtered for low complexity regions by default. Filter Low complexity Mask for lookup table only Expect Matrix Perform ungapped alignment Query Genetic Codes (blastx only) Database Genetic Codes (tblast[nx] only) Frame shift penalty for blastx Other advanced options: Graphical Overview Alignment view Descriptions Alignments Color schema

This work is supported by a grant from the National Science Foundation’s Frontiers Integrated Biological Research (FIBR) program (EF-0328636) and is a collaboration between Duke University, the Clemson University Genome Institute, Michigan State University, the University of Montana, the University of North Carolina at Chapel Hill and the University of Washington. Any opinions, findings, conclusions, or recommendations expressed at this site are those of the authors and do not necessarily reflect the views of the National Science Foundation.